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Supragingival Swab Correlation With Subgingival Mi

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Paper Newly identified species from the dog dental plaque microbiome highlight little overlap with humans.
Heidrich, Vitor; Fackelmann, Gloria; Malesevic, Milka et al. · 2025 · NPJ biofilms and microbiomes · DOI
Full title: Newly identified species from the dog dental plaque microbiome highlight little overlap with humans.
Authors: Heidrich, Vitor; Fackelmann, Gloria; Malesevic, Milka; Armanini, Federica; Dey, Hrituraj; Mengoni, Claudia; Stanisavljevic, Nemanja; Vukotic, Goran; Segata, Nicola
Year: 2025
Venue: NPJ biofilms and microbiomes
Paper Study of microbiocenosis of canine dental biofilms.
Kačírová, Jana; Maďari, Aladár; Mucha, Rastislav et al. · 2021 · Scientific reports · DOI
Full title: Study of microbiocenosis of canine dental biofilms.
Authors: Kačírová, Jana; Maďari, Aladár; Mucha, Rastislav; Fecskeová, Lívia K; Mujakic, Izabela; Koblížek, Michal; Nemcová, Radomíra; Maďar, Marián
Year: 2021
Venue: Scientific reports
Paper Investigation of periodontal disease development and Porphyromonas gulae FimA genotype distribution in small dogs
Yasuda, Junya; Yasuda, Hidemi; Nomura, Ryota et al. · 2024 · Scientific Reports · DOI
Full title: Investigation of periodontal disease development and Porphyromonas gulae FimA genotype distribution in small dogs
Authors: Yasuda, Junya; Yasuda, Hidemi; Nomura, Ryota; Matayoshi, Saaya; Inaba, Hiroaki; Góngora, Enrique; Iwashita, Naoki; Shirahata, So; Kaji, Noriyuki; Akitomo, Tatsuya; Mitsuhata, Chieko; Uchiyama, Jumpei; Fukuyama, Tomoki; Matsumoto‐Nakano, Michiyo; Nakano, Kazuhiko; Murakami, Masaru
Year: 2024
Venue: Scientific Reports
Paper Meta-transcriptomic analysis of companion animal infectomes reveals their diversity and potential roles in animal and human disease
Wu, Wei-Chen; Pan, Yuanfei; Zhou, Wu-Di et al. · 2024 · mSphere · DOI
Full title: Meta-transcriptomic analysis of companion animal infectomes reveals their diversity and potential roles in animal and human disease
Authors: Wu, Wei-Chen; Pan, Yuanfei; Zhou, Wu-Di; Liao, Yu-Qi; Peng, Minwu; Luo, Geng-Yan; Xin, Gen-Yang; Peng, Yani; An, Tongqing; Li, Bo; Luo, Huanle; Barrs, Vanessa R.; Beatty, Julia A.; Holmes, Edward C.; Zhao, Wenjing; Shī, Mǎng; Shu, Yuelong
Year: 2024
Venue: mSphere
Paper Development of an oral swab based microbiome test for the detection of feline dental disease
Kao, Damian; Yang, Julie; Nisperos, Sean et al. · 2021 · DOI
Full title: Development of an oral swab based microbiome test for the detection of feline dental disease
Authors: Kao, Damian; Yang, Julie; Nisperos, Sean; Drew, Norma; Berezovskaya, Polina; Kuruppu, Kaushalya; Mihaylova, Yuliana
Year: 2021
Paper Bacterial composition changes in canine plaque over periodontal disease severity and daily care practices
Watanabe, Ayano; Okada, Junichi; Niwa, Ryo et al. · 2023 · DOI
Full title: Bacterial composition changes in canine plaque over periodontal disease severity and daily care practices
Authors: Watanabe, Ayano; Okada, Junichi; Niwa, Ryo; Inui, Yukiko; Ito, Kohei; SHIMOKAWA, Yutaka; Kihira, Miho
Year: 2023
Paper Effectiveness of oral care interventions on malodour in dogs
Croft, Julie; Patel, Krusha V.; Inui, Taichi et al. · 2022 · BMC Veterinary Research · DOI
Full title: Effectiveness of oral care interventions on malodour in dogs
Authors: Croft, Julie; Patel, Krusha V.; Inui, Taichi; Ruparell, Avika; Staunton, Ruth; Holcombe, Lucy J.
Year: 2022
Venue: BMC Veterinary Research
Paper Optimizing methods and dodging pitfalls in microbiome research
Kim, Dorothy; Hofstaedter, Casey E.; Zhao, Chunyu et al. · 2017 · Microbiome · DOI
Full title: Optimizing methods and dodging pitfalls in microbiome research
Authors: Kim, Dorothy; Hofstaedter, Casey E.; Zhao, Chunyu; Mattei, Lisa M.; Tanes, Ceylan; Clarke, Erik; Lauder, Abigail; Sherrill-Mix, Scott; Chehoud, Christel; Kelsen, Judith R.; Conrad, Máire; Collman, Ronald G.; Baldassano, Robert N.; Bushman, Frederic D.; Bittinger, Kyle
Year: 2017
Venue: Microbiome
Paper Blood cultures and blood microbiota analysis as surrogates for bronchoalveolar lavage fluid analysis in dogs with bacterial pneumonia
Vientós‐Plotts, Aida I.; Ericsson, Aaron C.; Rindt, Hans et al. · 2021 · BMC Veterinary Research · DOI
Full title: Blood cultures and blood microbiota analysis as surrogates for bronchoalveolar lavage fluid analysis in dogs with bacterial pneumonia
Authors: Vientós‐Plotts, Aida I.; Ericsson, Aaron C.; Rindt, Hans; Reinero, Carol R.
Year: 2021
Venue: BMC Veterinary Research
Paper Developing diagnostic tools for canine periodontitis: combining molecular techniques and machine learning models.
Ruparell, Avika; Gibbs, Matthew; Colyer, Alison et al. · 2023 · BMC veterinary research · DOI
Full title: Developing diagnostic tools for canine periodontitis: combining molecular techniques and machine learning models.
Authors: Ruparell, Avika; Gibbs, Matthew; Colyer, Alison; Wallis, Corrin; Harris, Stephen; Holcombe, Lucy J
Year: 2023
Venue: BMC veterinary research
Paper Evaluation of the impact of dental prophylaxis on the oral microbiota of dogs.
Flancman, Rebecca; Singh, Ameet; Weese, J Scott · 2018 · PloS one · DOI
Full title: Evaluation of the impact of dental prophylaxis on the oral microbiota of dogs.
Authors: Flancman, Rebecca; Singh, Ameet; Weese, J Scott
Year: 2018
Venue: PloS one
Paper Influence of wet and dry commercial diets on the oral microbiota of Yorkshire terriers.
Wallis, Corrin; Ellerby, Zack; Amos, Gregory et al. · 2025 · BMC veterinary research · DOI
Full title: Influence of wet and dry commercial diets on the oral microbiota of Yorkshire terriers.
Authors: Wallis, Corrin; Ellerby, Zack; Amos, Gregory; Holcombe, Lucy J
Year: 2025
Venue: BMC veterinary research
Paper Microbiota populations in supragingival plaque, subgingival plaque, and saliva habitats of adult dogs.
Oba, Patrícia M; Carroll, Meredith Q; Alexander, Celeste et al. · 2021 · Animal microbiome · DOI
Full title: Microbiota populations in supragingival plaque, subgingival plaque, and saliva habitats of adult dogs.
Authors: Oba, Patrícia M; Carroll, Meredith Q; Alexander, Celeste; Valentine, Helen; Somrak, Amy J; Keating, Stephanie C J; Sage, Adrianna M; Swanson, Kelly S
Year: 2021
Venue: Animal microbiome
Paper A Cross-Sectional Survey of Bacterial Species in Plaque from Client Owned Dogs with Healthy Gingiva, Gingivitis or Mild Periodontitis
Davis, Ian J.; Wallis, Corrin; Deusch, Oliver et al. · 2013 · PLoS ONE · DOI
Full title: A Cross-Sectional Survey of Bacterial Species in Plaque from Client Owned Dogs with Healthy Gingiva, Gingivitis or Mild Periodontitis
Authors: Davis, Ian J.; Wallis, Corrin; Deusch, Oliver; Colyer, Alison; Milella, Lisa; Loman, Nicholas J.; Harris, Stephen
Year: 2013
Venue: PLoS ONE
Paper Distinctions and associations between the microbiota of saliva and supragingival plaque of permanent and deciduous teeth
Shi, Weihua; Tian, Jing; Xu, He et al. · 2018 · PLoS ONE · DOI
Full title: Distinctions and associations between the microbiota of saliva and supragingival plaque of permanent and deciduous teeth
Authors: Shi, Weihua; Tian, Jing; Xu, He; Zhou, Qiong; Qin, Man
Year: 2018
Venue: PLoS ONE
Paper The canine oral microbiome: variation in bacterial populations across different niches.
Ruparell, Avika; Inui, Taichi; Staunton, Ruth et al. · 2020 · BMC microbiology · DOI
Full title: The canine oral microbiome: variation in bacterial populations across different niches.
Authors: Ruparell, Avika; Inui, Taichi; Staunton, Ruth; Wallis, Corrin; Deusch, Oliver; Holcombe, Lucy J
Year: 2020
Venue: BMC microbiology
Paper Subgingival microbiota of dogs with healthy gingiva or early periodontal disease from different geographical locations.
Wallis, C; Milella, L; Colyer, A et al. · 2021 · BMC veterinary research · DOI
Full title: Subgingival microbiota of dogs with healthy gingiva or early periodontal disease from different geographical locations.
Authors: Wallis, C; Milella, L; Colyer, A; O'Flynn, C; Harris, S; Holcombe, L J
Year: 2021
Venue: BMC veterinary research
Paper The occurrence of Treponema spp. in gingival plaque from dogs with varying degree of periodontal disease
Nises, Janna; Rosander, Anna; Pettersson, Ann et al. · 2018 · PLoS ONE · DOI
Full title: The occurrence of Treponema spp. in gingival plaque from dogs with varying degree of periodontal disease
Authors: Nises, Janna; Rosander, Anna; Pettersson, Ann; Backhans, Annette
Year: 2018
Venue: PLoS ONE
Paper Microbiota profiling with long amplicons using Nanopore sequencing: full-length 16S rRNA gene and the 16S-ITS-23S of the rrn operon
Cuscó, Anna; Catozzi, Carlotta; Viñes, Joaquim et al. · 2019 · F1000Research · DOI
Full title: Microbiota profiling with long amplicons using Nanopore sequencing: full-length 16S rRNA gene and the 16S-ITS-23S of the rrn operon
Authors: Cuscó, Anna; Catozzi, Carlotta; Viñes, Joaquim; Sánchez, Armand; Francino, Olga
Year: 2019
Venue: F1000Research
Paper Stimulated and unstimulated saliva samples have significantly different bacterial profiles
Gomar‐Vercher, Sonia; Simón‐Soro, Áurea; Montiel‐Company, José María et al. · 2018 · PLoS ONE · DOI
Full title: Stimulated and unstimulated saliva samples have significantly different bacterial profiles
Authors: Gomar‐Vercher, Sonia; Simón‐Soro, Áurea; Montiel‐Company, José María; Almerich‐Silla, José Manuel
Year: 2018
Venue: PLoS ONE
Paper Early canine plaque biofilms: characterization of key bacterial interactions involved in initial colonization of enamel.
Holcombe, Lucy J; Patel, Niran; Colyer, Alison et al. · 2014 · PloS one · DOI
Full title: Early canine plaque biofilms: characterization of key bacterial interactions involved in initial colonization of enamel.
Authors: Holcombe, Lucy J; Patel, Niran; Colyer, Alison; Deusch, Oliver; O'Flynn, Ciaran; Harris, Stephen
Year: 2014
Venue: PloS one
Paper Microbiota profiling with long amplicons using Nanopore sequencing: full-length 16S rRNA gene and the 16S-ITS-23S of the rrn operon
Cuscó, Anna; Catozzi, Carlotta; Viñes, Joaquim et al. · 2019 · F1000Research · DOI
Full title: Microbiota profiling with long amplicons using Nanopore sequencing: full-length 16S rRNA gene and the 16S-ITS-23S of the rrn operon
Authors: Cuscó, Anna; Catozzi, Carlotta; Viñes, Joaquim; Sánchez, Armand; Francino, Olga
Year: 2019
Venue: F1000Research
Paper Clinical and mycological analysis of dog's oral cavity.
Santin, Rosema; Mattei, Antonella Souza; Waller, Stefanie Bressan et al. · 2013 · Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · DOI
Full title: Clinical and mycological analysis of dog's oral cavity.
Authors: Santin, Rosema; Mattei, Antonella Souza; Waller, Stefanie Bressan; Madrid, Isabel Martins; Cleff, Marlete Brum; Xavier, Melissa Orzechowski; de Oliveira Nobre, Márcia; Nascente, Patrícia da Silva; de Mello, João Roberto Braga; Meireles, Mário Carlos Araújo
Year: 2013
Venue: Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology]
Paper Characterising the Canine Oral Microbiome by Direct Sequencing of Reverse-Transcribed rRNA Molecules.
McDonald, James E; Larsen, Niels; Pennington, Andrea et al. · 2016 · PloS one · DOI
Full title: Characterising the Canine Oral Microbiome by Direct Sequencing of Reverse-Transcribed rRNA Molecules.
Authors: McDonald, James E; Larsen, Niels; Pennington, Andrea; Connolly, John; Wallis, Corrin; Rooks, David J; Hall, Neil; McCarthy, Alan J; Allison, Heather E
Year: 2016
Venue: PloS one
Paper The association between gingivitis and oral spirochetes in young cats and dogs
YAMAKI, Seiya; Tachibana, Masato; HACHIMURA, Hisae et al. · 2023 · PLoS ONE · DOI
Full title: The association between gingivitis and oral spirochetes in young cats and dogs
Authors: YAMAKI, Seiya; Tachibana, Masato; HACHIMURA, Hisae; Ogawa, Masao; KANEGAE, Shinya; Amimoto, Hirokazu; Shimizu, Takashi; Watanabe, Kenta; Watarai, Masahisa; AMIMOTO, Akiteru
Year: 2023
Venue: PLoS ONE
Paper An Assessment of the Stability of the Canine Oral Microbiota After Probiotic Administration in Healthy Dogs Over Time.
Bell, Sara E; Nash, Andrea K; Zanghi, Brian M et al. · 2020 · Frontiers in veterinary science · DOI
Full title: An Assessment of the Stability of the Canine Oral Microbiota After Probiotic Administration in Healthy Dogs Over Time.
Authors: Bell, Sara E; Nash, Andrea K; Zanghi, Brian M; Otto, Cynthia M; Perry, Erin B
Year: 2020
Venue: Frontiers in veterinary science
Paper Lactobacillus acidophilus novel strain, MJCD175, as a potential probiotic for oral health in dogs.
You, Inhwan; Mahiddine, Feriel Yasmine; Park, Heekee et al. · 2022 · Frontiers in veterinary science · DOI
Full title: Lactobacillus acidophilus novel strain, MJCD175, as a potential probiotic for oral health in dogs.
Authors: You, Inhwan; Mahiddine, Feriel Yasmine; Park, Heekee; Kim, Min Jung
Year: 2022
Venue: Frontiers in veterinary science
Paper Fusobacterium nucleatum and Treponema denticola are robust biomarkers for gingivitis and periodontitis in small dogs
Kwon, Daehyun; Bae, Kisuk; Jang, Kwangsik et al. · 2025 · Frontiers in Veterinary Science · DOI
Full title: Fusobacterium nucleatum and Treponema denticola are robust biomarkers for gingivitis and periodontitis in small dogs
Authors: Kwon, Daehyun; Bae, Kisuk; Jang, Kwangsik; Jo, Hyun Min; Kang, Seong Soo; Byun, Jonghoe; Kim, Se Eun
Year: 2025
Venue: Frontiers in Veterinary Science
Paper Real-world diagnostic potential of bacterial biomarkers of canine periodontitis.
Wallis, C V; Soltero-Rivera, M; Harvey, C et al. · 2024 · Frontiers in veterinary science · DOI
Full title: Real-world diagnostic potential of bacterial biomarkers of canine periodontitis.
Authors: Wallis, C V; Soltero-Rivera, M; Harvey, C; Reynolds, R M; Carvell-Miller, L J; Colyer, A; McKee, T S; Mills, T; Bergman, P J; Watson, P; Holcombe, L J
Year: 2024
Venue: Frontiers in veterinary science
Paper Endodontic Microbiome of Fractured Non-vital Teeth in Dogs Determined by 16S rRNA Gene Sequencing.
Rodrigues, Marjory Xavier; Nemec, Ana; Fiani, Nadine et al. · 2019 · Frontiers in veterinary science · DOI
Full title: Endodontic Microbiome of Fractured Non-vital Teeth in Dogs Determined by 16S rRNA Gene Sequencing.
Authors: Rodrigues, Marjory Xavier; Nemec, Ana; Fiani, Nadine; Bicalho, Rodrigo C; Peralta, Santiago
Year: 2019
Venue: Frontiers in veterinary science
Paper Molecular-level evaluation of selected periodontal pathogens from subgingival regions in canines and humans with periodontal disease
Gołyńska, Magdalena; Polkowska, Izabela; Bartoszcze-Tomaszewska, Małgorzata et al. · 2017 · Journal of Veterinary Science · DOI
Full title: Molecular-level evaluation of selected periodontal pathogens from subgingival regions in canines and humans with periodontal disease
Authors: Gołyńska, Magdalena; Polkowska, Izabela; Bartoszcze-Tomaszewska, Małgorzata; Sobczyńska-Rak, Aleksandra; Matuszewski, Łukasz
Year: 2017
Venue: Journal of Veterinary Science
Paper Analysis of the Oral and Fecal Microbiota of Companion Animals Using Next-Generation Sequencing of the 16S rRNA Gene
Sturgeon, Amy · 2014 · The Atrium (University of Guelph)
Full title: Analysis of the Oral and Fecal Microbiota of Companion Animals Using Next-Generation Sequencing of the 16S rRNA Gene
Authors: Sturgeon, Amy
Year: 2014
Venue: The Atrium (University of Guelph)
Thesis Evaluation of the Impact of Dental Prophylaxis on the Oral Microbiota of Dogs
Flancman, Rebecca · 2017 · University of Guelph · DOI
Full title: Evaluation of the Impact of Dental Prophylaxis on the Oral Microbiota of Dogs
Authors: Flancman, Rebecca
Year: 2017
Venue: University of Guelph
Thesis Oral dysbiosis in severe forms of periodontitis is associated with gut dysbiosis and correlated with salivary inflammatory mediators: a preliminary study
Mayer, Marcia Pinto Alves · 2021 · Universidade de São Paulo – USP Digital Library · DOI
Full title: Oral dysbiosis in severe forms of periodontitis is associated with gut dysbiosis and correlated with salivary inflammatory mediators: a preliminary study
Authors: Mayer, Marcia Pinto Alves
Year: 2021
Venue: Universidade de São Paulo – USP Digital Library
Thesis Oral and fecal microbiome in molar-incisor pattern periodontitis
Mayer, Marcia Pinto Alves · 2020 · Universidade de São Paulo – USP Digital Library · DOI
Full title: Oral and fecal microbiome in molar-incisor pattern periodontitis
Authors: Mayer, Marcia Pinto Alves
Year: 2020
Venue: Universidade de São Paulo – USP Digital Library
Thesis Analysis of the Oral and Fecal Microbiota of Companion Animals Using Next-Generation Sequencing of the 16S rRNA Gene
Sturgeon, Amy · 2014 · University of Guelph · DOI
Full title: Analysis of the Oral and Fecal Microbiota of Companion Animals Using Next-Generation Sequencing of the 16S rRNA Gene
Authors: Sturgeon, Amy
Year: 2014
Venue: University of Guelph
Thesis Role of Genetics in Subgingival and Supragingival Bacterial Colonization
Papapostolou, Anastasia · 2009 · OhioLINK Electronic Theses and Dissertations · DOI
Full title: Role of Genetics in Subgingival and Supragingival Bacterial Colonization
Authors: Papapostolou, Anastasia
Year: 2009
Venue: OhioLINK Electronic Theses and Dissertations
Thesis Drool rules! Novel methods to further knowledge of microbial communities in the human oral cavity
Marotz, Clarisse A · 2020 · University of California, San Diego (UCSD) · DOI
Full title: Drool rules! Novel methods to further knowledge of microbial communities in the human oral cavity
Authors: Marotz, Clarisse A
Year: 2020
Venue: University of California, San Diego (UCSD)
Thesis Emprego de saliva na determinação do risco às doenças periodontais: aspectos microbiológicos e clínicos
Shimada, Maurício Hidemi [UNESP] · 2017 · Universidade Estadual Paulista (UNESP) · DOI
Full title: Emprego de saliva na determinação do risco às doenças periodontais: aspectos microbiológicos e clínicos
Authors: Shimada, Maurício Hidemi [UNESP]
Year: 2017
Venue: Universidade Estadual Paulista (UNESP)
Thesis Aggregatibacter actinomycetemcomitans em pacientes com síndrome de down: influência da condição periodontal e higiene bucal
Messias, Leciana Paula de Angelis [UNESP]; Oliveira, Kathlenn Liezbeth de [UNESP]; Okamoto, Ana Cláudia [UNESP] et al. · 2016 · Universidade Estadual Paulista (UNESP) · DOI
Full title: Aggregatibacter actinomycetemcomitans em pacientes com síndrome de down: influência da condição periodontal e higiene bucal
Authors: Messias, Leciana Paula de Angelis [UNESP]; Oliveira, Kathlenn Liezbeth de [UNESP]; Okamoto, Ana Cláudia [UNESP]; Schweitzer, Christiane Marie [UNESP]; Gaetti-Jardim Júnior, Elerson [UNESP]
Year: 2016
Venue: Universidade Estadual Paulista (UNESP)
Thesis Principais afecções orais em carnívoros e primatas
Pires, Sabrina Fracascio · 2023 · Universidade Estadual Paulista (UNESP) · DOI
Full title: Principais afecções orais em carnívoros e primatas
Authors: Pires, Sabrina Fracascio
Year: 2023
Venue: Universidade Estadual Paulista (UNESP)
Thesis Fatores associados à presença de microrganismos superinfectantes ou oportunistas na cavidade bucal: relações com próteses totais, condições periodontais e susceptibilidade a antimicrobianos
Gaetti-Jardim, Ellen Cristina [UNESP] · 2014 · Universidade Estadual Paulista (UNESP) · DOI
Full title: Fatores associados à presença de microrganismos superinfectantes ou oportunistas na cavidade bucal: relações com próteses totais, condições periodontais e susceptibilidade a antimicrobianos
Authors: Gaetti-Jardim, Ellen Cristina [UNESP]
Year: 2014
Venue: Universidade Estadual Paulista (UNESP)
Patent us-10799121-b2
· 2020
Full title: us-10799121-b2
Year: 2020
Patent us-11390924-b2
· 2022
Full title: us-11390924-b2
Year: 2022
Patent us-10492692-b2
· 2019
Full title: us-10492692-b2
Year: 2019
Patent us-12258622-b2
· 2025
Full title: us-12258622-b2
Year: 2025
Patent us-2015219665-a1
· 2015
Full title: us-2015219665-a1
Year: 2015
Patent us-2019142275-a1
· 2019
Full title: us-2019142275-a1
Year: 2019
Patent us-2020121191-a1
· 2020
Full title: us-2020121191-a1
Year: 2020
Patent us-2017211131-a1
· 2017
Full title: us-2017211131-a1
Year: 2017
Patent us-2019153518-a1
· 2019
Full title: us-2019153518-a1
Year: 2019
Patent us-2021401408-a1
· 2021
Full title: us-2021401408-a1
Year: 2021
Patent us-2021164028-a1
· 2021
Full title: us-2021164028-a1
Year: 2021
Patent us-2021238659-a1
· 2021
Full title: us-2021238659-a1
Year: 2021
Patent us-2023395264-a1
· 2023
Full title: us-2023395264-a1
Year: 2023
Patent us-2024197440-a1
· 2024
Full title: us-2024197440-a1
Year: 2024
Patent us-2025270658-a1
· 2025
Full title: us-2025270658-a1
Year: 2025
Patent us-2024420847-a1
· 2024
Full title: us-2024420847-a1
Year: 2024
Patent us-2025308706-a1
· 2025
Full title: us-2025308706-a1
Year: 2025

Metadata only

Paper Comparison of subgingival and gingival margin plaque microbiota from dogs with healthy gingiva and early periodontal disease.
Ruparell, Avika; Wallis, Corrin; Haydock, Richard et al. · 2021 · Research in veterinary science · DOI
Full title: Comparison of subgingival and gingival margin plaque microbiota from dogs with healthy gingiva and early periodontal disease.
Authors: Ruparell, Avika; Wallis, Corrin; Haydock, Richard; Cawthrow, Amy; Holcombe, Lucy J
Year: 2021
Venue: Research in veterinary science
Paper Development of an in-home screening tool for canine periodontitis.
Wallis, C; Ruparell, A; Soltero-Rivera, M et al. · 2025 · Veterinary journal (London, England : 1997) · DOI
Full title: Development of an in-home screening tool for canine periodontitis.
Authors: Wallis, C; Ruparell, A; Soltero-Rivera, M; Harvey, C; Carvell-Miller, L; Colyer, A; Reynolds, R M; McKee, T S; Mills, T; Bergman, P J; Watson, P; Holcombe, L J
Year: 2025
Venue: Veterinary journal (London, England : 1997)
Paper Oral microbiota populations of adult dogs consuming wet or dry foods.
Oba, Patrícia M; Sieja, Kelly M; Keating, Stephanie C J et al. · 2022 · Journal of animal science · DOI
Full title: Oral microbiota populations of adult dogs consuming wet or dry foods.
Authors: Oba, Patrícia M; Sieja, Kelly M; Keating, Stephanie C J; Hristova, Teodora; Somrak, Amy J; Swanson, Kelly S
Year: 2022
Venue: Journal of animal science
Paper Dental chews positively shift the oral microbiota of adult dogs.
Oba, Patrícia M; Carroll, Meredith Q; Alexander, Celeste et al. · 2021 · Journal of animal science · DOI
Full title: Dental chews positively shift the oral microbiota of adult dogs.
Authors: Oba, Patrícia M; Carroll, Meredith Q; Alexander, Celeste; Somrak, Amy J; Keating, Stephanie C J; Sage, Adrianna M; Swanson, Kelly S
Year: 2021
Venue: Journal of animal science
Paper Multiwave Locked System Laser Treatment Reduces the Bacterial Load in the Gingival Sulcus of Dogs After Plaque Removal.
Pallante, Ivana; Squarzoni, Paolo; Mazzotta, Elisa et al. · 2025 · Veterinary sciences · DOI
Full title: Multiwave Locked System Laser Treatment Reduces the Bacterial Load in the Gingival Sulcus of Dogs After Plaque Removal.
Authors: Pallante, Ivana; Squarzoni, Paolo; Mazzotta, Elisa; Pozzato, Nicola; Monici, Monica
Year: 2025
Venue: Veterinary sciences
Thesis Rapid Chair-Side Test for Detection of Porphyromonas gingivalis
O'Brien-Simpson, NM; Burgess, K; Lenzo, JC et al. · 2017 · University of Melbourne · DOI
Full title: Rapid Chair-Side Test for Detection of Porphyromonas gingivalis
Authors: O'Brien-Simpson, NM; Burgess, K; Lenzo, JC; Brammar, GC; Darby, IB; Reynolds, EC
Year: 2017
Venue: University of Melbourne
Thesis Influence of periodontal treatment on subgingival and salivary microbiotas
Belstrøm, Daniel; Grande, Maria Anastasia; Sembler-Møller, Maria Lynn et al. · 2018 · University of Copenhagen · DOI
Full title: Influence of periodontal treatment on subgingival and salivary microbiotas
Authors: Belstrøm, Daniel; Grande, Maria Anastasia; Sembler-Møller, Maria Lynn; Kirkby, Nikolai; Cotton, Sean L; Paster, Bruce J; Holmstrup, Palle
Year: 2018
Venue: University of Copenhagen
Thesis Saliva Versus All-Site Microbiome and Proteome Mapping in Periodontitis
Bao, Kai; Afacan, Beral; Grossmann, Jonas et al. · 2025 · ETH Zurich (Swiss Federal Institute of Technology in Zurich) · DOI
Full title: Saliva Versus All-Site Microbiome and Proteome Mapping in Periodontitis
Authors: Bao, Kai; Afacan, Beral; Grossmann, Jonas; Silbereisen, Angelika; Öztürk, Veli-Özgen; Emingil, Gulnur; Belibasakis, Georgios N.; Bostanci, Nagihan
Year: 2025
Venue: ETH Zurich (Swiss Federal Institute of Technology in Zurich)
Patent us-2016138089-a1
· 2016
Full title: us-2016138089-a1
Year: 2016
Patent us-2022119864-a1
· 2022
Full title: us-2022119864-a1
Year: 2022
Patent us-2024384346-a1
· 2024
Full title: us-2024384346-a1
Year: 2024

2. Data Extraction

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Paper
Newly identified species from the dog dental plaque microbiome highlight little overlap with humans.
Heidrich, Vitor; Fackelmann, Gloria; Malesevic, Milka et al. · 2025
Full title: Newly identified species from the dog dental plaque microbiome highlight little overlap with humans.
Authors: Heidrich, Vitor; Fackelmann, Gloria; Malesevic, Milka; Armanini, Federica; Dey, Hrituraj; Mengoni, Claudia; Stanisavljevic, Nemanja; Vukotic, Goran; Segata, Nicola
Paper
Study of microbiocenosis of canine dental biofilms.
Kačírová, Jana; Maďari, Aladár; Mucha, Rastislav et al. · 2021
Full title: Study of microbiocenosis of canine dental biofilms.
Authors: Kačírová, Jana; Maďari, Aladár; Mucha, Rastislav; Fecskeová, Lívia K; Mujakic, Izabela; Koblížek, Michal; Nemcová, Radomíra; Maďar, Marián
Paper
Investigation of periodontal disease development and Porphyromonas gulae FimA genotype distribution in small dogs
Yasuda, Junya; Yasuda, Hidemi; Nomura, Ryota et al. · 2024
Full title: Investigation of periodontal disease development and Porphyromonas gulae FimA genotype distribution in small dogs
Authors: Yasuda, Junya; Yasuda, Hidemi; Nomura, Ryota; Matayoshi, Saaya; Inaba, Hiroaki; Góngora, Enrique; Iwashita, Naoki; Shirahata, So; Kaji, Noriyuki; Akitomo, Tatsuya; Mitsuhata, Chieko; Uchiyama, Jumpei; Fukuyama, Tomoki; Matsumoto‐Nakano, Michiyo; Nakano, Kazuhiko; Murakami, Masaru
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Meta-transcriptomic analysis of companion animal infectomes reveals their diversity and potential roles in animal and human disease
Wu, Wei-Chen; Pan, Yuanfei; Zhou, Wu-Di et al. · 2024
Full title: Meta-transcriptomic analysis of companion animal infectomes reveals their diversity and potential roles in animal and human disease
Authors: Wu, Wei-Chen; Pan, Yuanfei; Zhou, Wu-Di; Liao, Yu-Qi; Peng, Minwu; Luo, Geng-Yan; Xin, Gen-Yang; Peng, Yani; An, Tongqing; Li, Bo; Luo, Huanle; Barrs, Vanessa R.; Beatty, Julia A.; Holmes, Edward C.; Zhao, Wenjing; Shī, Mǎng; Shu, Yuelong
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Development of an oral swab based microbiome test for the detection of feline dental disease
Kao, Damian; Yang, Julie; Nisperos, Sean et al. · 2021
Full title: Development of an oral swab based microbiome test for the detection of feline dental disease
Authors: Kao, Damian; Yang, Julie; Nisperos, Sean; Drew, Norma; Berezovskaya, Polina; Kuruppu, Kaushalya; Mihaylova, Yuliana
Paper
Bacterial composition changes in canine plaque over periodontal disease severity and daily care practices
Watanabe, Ayano; Okada, Junichi; Niwa, Ryo et al. · 2023
Full title: Bacterial composition changes in canine plaque over periodontal disease severity and daily care practices
Authors: Watanabe, Ayano; Okada, Junichi; Niwa, Ryo; Inui, Yukiko; Ito, Kohei; SHIMOKAWA, Yutaka; Kihira, Miho
Paper
Effectiveness of oral care interventions on malodour in dogs
Croft, Julie; Patel, Krusha V.; Inui, Taichi et al. · 2022
Full title: Effectiveness of oral care interventions on malodour in dogs
Authors: Croft, Julie; Patel, Krusha V.; Inui, Taichi; Ruparell, Avika; Staunton, Ruth; Holcombe, Lucy J.
Paper
Optimizing methods and dodging pitfalls in microbiome research
Kim, Dorothy; Hofstaedter, Casey E.; Zhao, Chunyu et al. · 2017
Full title: Optimizing methods and dodging pitfalls in microbiome research
Authors: Kim, Dorothy; Hofstaedter, Casey E.; Zhao, Chunyu; Mattei, Lisa M.; Tanes, Ceylan; Clarke, Erik; Lauder, Abigail; Sherrill-Mix, Scott; Chehoud, Christel; Kelsen, Judith R.; Conrad, Máire; Collman, Ronald G.; Baldassano, Robert N.; Bushman, Frederic D.; Bittinger, Kyle
Paper
Blood cultures and blood microbiota analysis as surrogates for bronchoalveolar lavage fluid analysis in dogs with bacterial pneumonia
Vientós‐Plotts, Aida I.; Ericsson, Aaron C.; Rindt, Hans et al. · 2021
Full title: Blood cultures and blood microbiota analysis as surrogates for bronchoalveolar lavage fluid analysis in dogs with bacterial pneumonia
Authors: Vientós‐Plotts, Aida I.; Ericsson, Aaron C.; Rindt, Hans; Reinero, Carol R.
Paper
Developing diagnostic tools for canine periodontitis: combining molecular techniques and machine learning models.
Ruparell, Avika; Gibbs, Matthew; Colyer, Alison et al. · 2023
Full title: Developing diagnostic tools for canine periodontitis: combining molecular techniques and machine learning models.
Authors: Ruparell, Avika; Gibbs, Matthew; Colyer, Alison; Wallis, Corrin; Harris, Stephen; Holcombe, Lucy J
Paper
Evaluation of the impact of dental prophylaxis on the oral microbiota of dogs.
Flancman, Rebecca; Singh, Ameet; Weese, J Scott · 2018
Full title: Evaluation of the impact of dental prophylaxis on the oral microbiota of dogs.
Authors: Flancman, Rebecca; Singh, Ameet; Weese, J Scott
Paper
Influence of wet and dry commercial diets on the oral microbiota of Yorkshire terriers.
Wallis, Corrin; Ellerby, Zack; Amos, Gregory et al. · 2025
Full title: Influence of wet and dry commercial diets on the oral microbiota of Yorkshire terriers.
Authors: Wallis, Corrin; Ellerby, Zack; Amos, Gregory; Holcombe, Lucy J
Paper
Microbiota populations in supragingival plaque, subgingival plaque, and saliva habitats of adult dogs.
Oba, Patrícia M; Carroll, Meredith Q; Alexander, Celeste et al. · 2021
Full title: Microbiota populations in supragingival plaque, subgingival plaque, and saliva habitats of adult dogs.
Authors: Oba, Patrícia M; Carroll, Meredith Q; Alexander, Celeste; Valentine, Helen; Somrak, Amy J; Keating, Stephanie C J; Sage, Adrianna M; Swanson, Kelly S
Paper
A Cross-Sectional Survey of Bacterial Species in Plaque from Client Owned Dogs with Healthy Gingiva, Gingivitis or Mild Periodontitis
Davis, Ian J.; Wallis, Corrin; Deusch, Oliver et al. · 2013
Full title: A Cross-Sectional Survey of Bacterial Species in Plaque from Client Owned Dogs with Healthy Gingiva, Gingivitis or Mild Periodontitis
Authors: Davis, Ian J.; Wallis, Corrin; Deusch, Oliver; Colyer, Alison; Milella, Lisa; Loman, Nicholas J.; Harris, Stephen
Paper
Distinctions and associations between the microbiota of saliva and supragingival plaque of permanent and deciduous teeth
Shi, Weihua; Tian, Jing; Xu, He et al. · 2018
Full title: Distinctions and associations between the microbiota of saliva and supragingival plaque of permanent and deciduous teeth
Authors: Shi, Weihua; Tian, Jing; Xu, He; Zhou, Qiong; Qin, Man
Paper
The canine oral microbiome: variation in bacterial populations across different niches.
Ruparell, Avika; Inui, Taichi; Staunton, Ruth et al. · 2020
Full title: The canine oral microbiome: variation in bacterial populations across different niches.
Authors: Ruparell, Avika; Inui, Taichi; Staunton, Ruth; Wallis, Corrin; Deusch, Oliver; Holcombe, Lucy J
Paper
Subgingival microbiota of dogs with healthy gingiva or early periodontal disease from different geographical locations.
Wallis, C; Milella, L; Colyer, A et al. · 2021
Full title: Subgingival microbiota of dogs with healthy gingiva or early periodontal disease from different geographical locations.
Authors: Wallis, C; Milella, L; Colyer, A; O'Flynn, C; Harris, S; Holcombe, L J
Paper
The occurrence of Treponema spp. in gingival plaque from dogs with varying degree of periodontal disease
Nises, Janna; Rosander, Anna; Pettersson, Ann et al. · 2018
Full title: The occurrence of Treponema spp. in gingival plaque from dogs with varying degree of periodontal disease
Authors: Nises, Janna; Rosander, Anna; Pettersson, Ann; Backhans, Annette
Paper
Microbiota profiling with long amplicons using Nanopore sequencing: full-length 16S rRNA gene and the 16S-ITS-23S of the rrn operon
Cuscó, Anna; Catozzi, Carlotta; Viñes, Joaquim et al. · 2019
Full title: Microbiota profiling with long amplicons using Nanopore sequencing: full-length 16S rRNA gene and the 16S-ITS-23S of the rrn operon
Authors: Cuscó, Anna; Catozzi, Carlotta; Viñes, Joaquim; Sánchez, Armand; Francino, Olga
Paper
Stimulated and unstimulated saliva samples have significantly different bacterial profiles
Gomar‐Vercher, Sonia; Simón‐Soro, Áurea; Montiel‐Company, José María et al. · 2018
Full title: Stimulated and unstimulated saliva samples have significantly different bacterial profiles
Authors: Gomar‐Vercher, Sonia; Simón‐Soro, Áurea; Montiel‐Company, José María; Almerich‐Silla, José Manuel
Paper
Early canine plaque biofilms: characterization of key bacterial interactions involved in initial colonization of enamel.
Holcombe, Lucy J; Patel, Niran; Colyer, Alison et al. · 2014
Full title: Early canine plaque biofilms: characterization of key bacterial interactions involved in initial colonization of enamel.
Authors: Holcombe, Lucy J; Patel, Niran; Colyer, Alison; Deusch, Oliver; O'Flynn, Ciaran; Harris, Stephen
Paper
Microbiota profiling with long amplicons using Nanopore sequencing: full-length 16S rRNA gene and the 16S-ITS-23S of the rrn operon
Cuscó, Anna; Catozzi, Carlotta; Viñes, Joaquim et al. · 2019
Full title: Microbiota profiling with long amplicons using Nanopore sequencing: full-length 16S rRNA gene and the 16S-ITS-23S of the rrn operon
Authors: Cuscó, Anna; Catozzi, Carlotta; Viñes, Joaquim; Sánchez, Armand; Francino, Olga
Paper
Clinical and mycological analysis of dog's oral cavity.
Santin, Rosema; Mattei, Antonella Souza; Waller, Stefanie Bressan et al. · 2013
Full title: Clinical and mycological analysis of dog's oral cavity.
Authors: Santin, Rosema; Mattei, Antonella Souza; Waller, Stefanie Bressan; Madrid, Isabel Martins; Cleff, Marlete Brum; Xavier, Melissa Orzechowski; de Oliveira Nobre, Márcia; Nascente, Patrícia da Silva; de Mello, João Roberto Braga; Meireles, Mário Carlos Araújo
Paper
Characterising the Canine Oral Microbiome by Direct Sequencing of Reverse-Transcribed rRNA Molecules.
McDonald, James E; Larsen, Niels; Pennington, Andrea et al. · 2016
Full title: Characterising the Canine Oral Microbiome by Direct Sequencing of Reverse-Transcribed rRNA Molecules.
Authors: McDonald, James E; Larsen, Niels; Pennington, Andrea; Connolly, John; Wallis, Corrin; Rooks, David J; Hall, Neil; McCarthy, Alan J; Allison, Heather E
Paper
The association between gingivitis and oral spirochetes in young cats and dogs
YAMAKI, Seiya; Tachibana, Masato; HACHIMURA, Hisae et al. · 2023
Full title: The association between gingivitis and oral spirochetes in young cats and dogs
Authors: YAMAKI, Seiya; Tachibana, Masato; HACHIMURA, Hisae; Ogawa, Masao; KANEGAE, Shinya; Amimoto, Hirokazu; Shimizu, Takashi; Watanabe, Kenta; Watarai, Masahisa; AMIMOTO, Akiteru
Paper
An Assessment of the Stability of the Canine Oral Microbiota After Probiotic Administration in Healthy Dogs Over Time.
Bell, Sara E; Nash, Andrea K; Zanghi, Brian M et al. · 2020
Full title: An Assessment of the Stability of the Canine Oral Microbiota After Probiotic Administration in Healthy Dogs Over Time.
Authors: Bell, Sara E; Nash, Andrea K; Zanghi, Brian M; Otto, Cynthia M; Perry, Erin B
Paper
Lactobacillus acidophilus novel strain, MJCD175, as a potential probiotic for oral health in dogs.
You, Inhwan; Mahiddine, Feriel Yasmine; Park, Heekee et al. · 2022
Full title: Lactobacillus acidophilus novel strain, MJCD175, as a potential probiotic for oral health in dogs.
Authors: You, Inhwan; Mahiddine, Feriel Yasmine; Park, Heekee; Kim, Min Jung
Paper
Fusobacterium nucleatum and Treponema denticola are robust biomarkers for gingivitis and periodontitis in small dogs
Kwon, Daehyun; Bae, Kisuk; Jang, Kwangsik et al. · 2025
Full title: Fusobacterium nucleatum and Treponema denticola are robust biomarkers for gingivitis and periodontitis in small dogs
Authors: Kwon, Daehyun; Bae, Kisuk; Jang, Kwangsik; Jo, Hyun Min; Kang, Seong Soo; Byun, Jonghoe; Kim, Se Eun
Paper
Real-world diagnostic potential of bacterial biomarkers of canine periodontitis.
Wallis, C V; Soltero-Rivera, M; Harvey, C et al. · 2024
Full title: Real-world diagnostic potential of bacterial biomarkers of canine periodontitis.
Authors: Wallis, C V; Soltero-Rivera, M; Harvey, C; Reynolds, R M; Carvell-Miller, L J; Colyer, A; McKee, T S; Mills, T; Bergman, P J; Watson, P; Holcombe, L J
Paper
Endodontic Microbiome of Fractured Non-vital Teeth in Dogs Determined by 16S rRNA Gene Sequencing.
Rodrigues, Marjory Xavier; Nemec, Ana; Fiani, Nadine et al. · 2019
Full title: Endodontic Microbiome of Fractured Non-vital Teeth in Dogs Determined by 16S rRNA Gene Sequencing.
Authors: Rodrigues, Marjory Xavier; Nemec, Ana; Fiani, Nadine; Bicalho, Rodrigo C; Peralta, Santiago
Paper
Molecular-level evaluation of selected periodontal pathogens from subgingival regions in canines and humans with periodontal disease
Gołyńska, Magdalena; Polkowska, Izabela; Bartoszcze-Tomaszewska, Małgorzata et al. · 2017
Full title: Molecular-level evaluation of selected periodontal pathogens from subgingival regions in canines and humans with periodontal disease
Authors: Gołyńska, Magdalena; Polkowska, Izabela; Bartoszcze-Tomaszewska, Małgorzata; Sobczyńska-Rak, Aleksandra; Matuszewski, Łukasz
Paper
Analysis of the Oral and Fecal Microbiota of Companion Animals Using Next-Generation Sequencing of the 16S rRNA Gene
Sturgeon, Amy · 2014
Full title: Analysis of the Oral and Fecal Microbiota of Companion Animals Using Next-Generation Sequencing of the 16S rRNA Gene
Authors: Sturgeon, Amy
Thesis
Evaluation of the Impact of Dental Prophylaxis on the Oral Microbiota of Dogs
Flancman, Rebecca · 2017
Full title: Evaluation of the Impact of Dental Prophylaxis on the Oral Microbiota of Dogs
Authors: Flancman, Rebecca
Thesis
Oral dysbiosis in severe forms of periodontitis is associated with gut dysbiosis and correlated with salivary inflammatory mediators: a preliminary study
Mayer, Marcia Pinto Alves · 2021
Full title: Oral dysbiosis in severe forms of periodontitis is associated with gut dysbiosis and correlated with salivary inflammatory mediators: a preliminary study
Authors: Mayer, Marcia Pinto Alves
Thesis
Oral and fecal microbiome in molar-incisor pattern periodontitis
Mayer, Marcia Pinto Alves · 2020
Full title: Oral and fecal microbiome in molar-incisor pattern periodontitis
Authors: Mayer, Marcia Pinto Alves
Thesis
Analysis of the Oral and Fecal Microbiota of Companion Animals Using Next-Generation Sequencing of the 16S rRNA Gene
Sturgeon, Amy · 2014
Full title: Analysis of the Oral and Fecal Microbiota of Companion Animals Using Next-Generation Sequencing of the 16S rRNA Gene
Authors: Sturgeon, Amy
Thesis
Role of Genetics in Subgingival and Supragingival Bacterial Colonization
Papapostolou, Anastasia · 2009
Full title: Role of Genetics in Subgingival and Supragingival Bacterial Colonization
Authors: Papapostolou, Anastasia
Thesis
Drool rules! Novel methods to further knowledge of microbial communities in the human oral cavity
Marotz, Clarisse A · 2020
Full title: Drool rules! Novel methods to further knowledge of microbial communities in the human oral cavity
Authors: Marotz, Clarisse A
Thesis
Emprego de saliva na determinação do risco às doenças periodontais: aspectos microbiológicos e clínicos
Shimada, Maurício Hidemi [UNESP] · 2017
Full title: Emprego de saliva na determinação do risco às doenças periodontais: aspectos microbiológicos e clínicos
Authors: Shimada, Maurício Hidemi [UNESP]
Thesis
Aggregatibacter actinomycetemcomitans em pacientes com síndrome de down: influência da condição periodontal e higiene bucal
Messias, Leciana Paula de Angelis [UNESP]; Oliveira, Kathlenn Liezbeth de [UNESP]; Okamoto, Ana Cláudia [UNESP] et al. · 2016
Full title: Aggregatibacter actinomycetemcomitans em pacientes com síndrome de down: influência da condição periodontal e higiene bucal
Authors: Messias, Leciana Paula de Angelis [UNESP]; Oliveira, Kathlenn Liezbeth de [UNESP]; Okamoto, Ana Cláudia [UNESP]; Schweitzer, Christiane Marie [UNESP]; Gaetti-Jardim Júnior, Elerson [UNESP]
Thesis
Principais afecções orais em carnívoros e primatas
Pires, Sabrina Fracascio · 2023
Full title: Principais afecções orais em carnívoros e primatas
Authors: Pires, Sabrina Fracascio
Thesis
Fatores associados à presença de microrganismos superinfectantes ou oportunistas na cavidade bucal: relações com próteses totais, condições periodontais e susceptibilidade a antimicrobianos
Gaetti-Jardim, Ellen Cristina [UNESP] · 2014
Full title: Fatores associados à presença de microrganismos superinfectantes ou oportunistas na cavidade bucal: relações com próteses totais, condições periodontais e susceptibilidade a antimicrobianos
Authors: Gaetti-Jardim, Ellen Cristina [UNESP]
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